Transposable elements methylation details:
Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
---|---|---|---|---|---|
LTR12 | LTR | 756 | 5.08E-05 | 0.009519 | Blood |
TE Information :
Family | Total base | CpG count | CpG content |
---|---|---|---|
ERV1 | 520698 | 9241 | 0.03549 |
Found 23 LTR12 transposable elements were hypo-methylated:
Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
---|---|---|---|---|---|---|---|
chr14 | 93216434 | 93217084 | + | 4.303e-16 | chr14:93216632-93218010 | Epigenome browser | Genome browser |
chr1 | 8213120 | 8213872 | - | 0.0002145 | chr1:8208627-8215216 | Epigenome browser | Genome browser |
chr4 | 4350125 | 4350873 | - | 0.000000006969 | chr4:4350451-4352044 | Epigenome browser | Genome browser |
chr3 | 140736151 | 140736904 | + | 6.342e-16 | chr3:140735675-140737524 | Epigenome browser | Genome browser |
chr14 | 93217359 | 93217464 | + | 0.0000000000007277 | chr14:93216632-93218010 | Epigenome browser | Genome browser |
chr17 | 26173206 | 26173530 | - | 0.00000000000001089 | chr17:26172492-26175267 | Epigenome browser | Genome browser |
chr3 | 67705622 | 67706454 | + | 2.2e-16 | chr3:67704907-67707602 | Epigenome browser | Genome browser |
chr3 | 38480038 | 38480596 | - | 0.0003549 | chr3:38479139-38480725 | Epigenome browser | Genome browser |
chr19 | 52179490 | 52180333 | + | 0.0000001051 | chr19:52179823-52181323 | Epigenome browser | Genome browser |
chr7 | 45979724 | 45980476 | + | 0.00000000000001581 | chr7:45980402-45981717 | Epigenome browser | Genome browser |
chr5 | 138891263 | 138891987 | + | 0.000000000001705 | chr5:138889597-138893740 | Epigenome browser | Genome browser |
chr1 | 39443356 | 39443981 | - | 0.0000000259 | chr1:39441944-39443512 | Epigenome browser | Genome browser |
chr7 | 134246900 | 134247459 | - | 0.002823 | chr7:134246267-134247093 | Epigenome browser | Genome browser |
chr3 | 32156127 | 32156946 | - | 2.2e-16 | chr3:32151770-32161870 | Epigenome browser | Genome browser |
chr19 | 33184012 | 33184760 | - | 0.000000002195 | chr19:33183452-33187291 | Epigenome browser | Genome browser |
chr13 | 111841561 | 111842288 | - | 0.00000000002259 | chr13:111826449-111844240 | Epigenome browser | Genome browser |
chr15 | 34310464 | 34311387 | - | 0.000000000000003507 | chr15:34309978-34311751 | Epigenome browser | Genome browser |
chr16 | 89501429 | 89502099 | + | 0.00000000002108 | chr16:89496856-89523539 | Epigenome browser | Genome browser |
chr7 | 158655370 | 158656115 | - | 0.0089 | chr7:158655357-158656449 | Epigenome browser | Genome browser |
chr6 | 28412195 | 28412970 | - | 0.00000001253 | chr6:28409958-28412253 | Epigenome browser | Genome browser |
chr10 | 91171969 | 91172704 | + | 0.000007073 | chr10:91171991-91174170 | Epigenome browser | Genome browser |
chr17 | 26173843 | 26174326 | - | 0.001107 | chr17:26172492-26175267 | Epigenome browser | Genome browser |
chr1 | 8958367 | 8959173 | + | 0.00003309 | chr1:8958539-8961255 | Epigenome browser | Genome browser |