Transposable elements methylation details:
| Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
|---|---|---|---|---|---|
| LTR10A | LTR | 307 | 5.89E-07 | 1.241e-05 | Breast |
TE Information :
| Family | Total base | CpG count | CpG content |
|---|---|---|---|
| ERV1 | 140286 | 1626 | 0.02318 |
Found 6 LTR10A transposable elements were hypo-methylated:
| Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
|---|---|---|---|---|---|---|---|
| chr2 | 217430197 | 217430477 | - | 0.03157 | chr2:217429583-217431111 | Epigenome browser | Genome browser |
| chr16 | 1346823 | 1347313 | - | 0.0000006176 | chr16:1347121-1347866 | Epigenome browser | Genome browser |
| chr1 | 31977509 | 31977792 | - | 0.02304 | chr1:31976188-31978364 | Epigenome browser | Genome browser |
| chr1 | 1405899 | 1406238 | - | 0.00000009348 | chr1:1405806-1406774 | Epigenome browser | Genome browser |
| chr6 | 87923002 | 87923574 | - | 0.000001257 | chr6:87922482-87923911 | Epigenome browser | Genome browser |
| chr3 | 195443049 | 195443250 | - | 0.0006752 | chr3:195443036-195444503 | Epigenome browser | Genome browser |