Transposable elements methylation details:
| Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
|---|---|---|---|---|---|
| L1PBa1 | LINE | 404 | 3.95E-06 | 1.06e-07 | Breast |
TE Information :
| Family | Total base | CpG count | CpG content |
|---|---|---|---|
| L1 | 574022 | 4150 | 0.01446 |
Found 11 L1PBa1 transposable elements were hypo-methylated:
| Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
|---|---|---|---|---|---|---|---|
| chr21 | 37172847 | 37176941 | + | 0.02435 | chr21:37172709-37174442 | Epigenome browser | Genome browser |
| chr17 | 2534566 | 2535162 | - | 0.0007319 | chr17:2533824-2535469 | Epigenome browser | Genome browser |
| chr12 | 25745129 | 25749468 | + | 0.0404 | chr12:25742633-25745267 | Epigenome browser | Genome browser |
| chr11 | 11156979 | 11157019 | - | 0.0001822 | chr11:11156420-11157954 | Epigenome browser | Genome browser |
| chr11 | 71553218 | 71554207 | + | 0.00001501 | chr11:71552767-71553948 | Epigenome browser | Genome browser |
| chr12 | 29793218 | 29795550 | + | 0.00004955 | chr12:29793319-29794026 | Epigenome browser | Genome browser |
| chr17 | 6757049 | 6757728 | + | 0.000000001073 | chr17:6757703-6760725 | Epigenome browser | Genome browser |
| chr4 | 168815770 | 168817207 | + | 0.04745 | chr4:168816519-168817454 | Epigenome browser | Genome browser |
| chr3 | 5675164 | 5676829 | - | 0.00000001061 | chr3:5675875-5676939 | Epigenome browser | Genome browser |
| chr14 | 44120099 | 44121415 | + | 0.004086 | chr14:44119862-44121400 | Epigenome browser | Genome browser |
| chr12 | 123734375 | 123736408 | - | 0.00007269 | chr12:123734764-123737144 | Epigenome browser | Genome browser |