Transposable elements methylation details:
| Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
|---|---|---|---|---|---|
| HERVIP10FH-int | LTR | 674 | 5.35E-06 | 2.611e-06 | H1ES |
TE Information :
| Family | Total base | CpG count | CpG content |
|---|---|---|---|
| ERV1 | 493565 | 4075 | 0.01651 |
Found 9 HERVIP10FH-int transposable elements were hypo-methylated:
| Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
|---|---|---|---|---|---|---|---|
| chr6 | 117937055 | 117939803 | + | 0.001196 | chr6:117938548-117939176 | Epigenome browser | Genome browser |
| chr6 | 88191153 | 88193268 | - | 0.02744 | chr6:88193055-88193816 | Epigenome browser | Genome browser |
| chr5 | 142472029 | 142474071 | - | 0.00005423 | chr5:142471595-142472123 | Epigenome browser | Genome browser |
| chr19 | 58312996 | 58313810 | - | 0.01379 | chr19:58313426-58314244 | Epigenome browser | Genome browser |
| chr5 | 142468687 | 142471719 | - | 0.00639 | chr5:142471595-142472123 | Epigenome browser | Genome browser |
| chr2 | 65271911 | 65274063 | - | 0.00005593 | chr2:65272576-65273442 | Epigenome browser | Genome browser |
| chr19 | 58311658 | 58312697 | - | 0.009214 | chr19:58312339-58313059 | Epigenome browser | Genome browser |
| chr6 | 89434841 | 89439854 | + | 0.00000003625 | chr6:89438310-89439067 | Epigenome browser | Genome browser |
| chr6 | 88193760 | 88194032 | - | 0.0003848 | chr6:88193055-88193816 | Epigenome browser | Genome browser |