Transposable elements methylation details:
Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
---|---|---|---|---|---|
HERVIP10F-int | LTR | 459 | 1.11E-06 | 8.128e-07 | Breast |
TE Information :
Family | Total base | CpG count | CpG content |
---|---|---|---|
ERV1 | 621851 | 5724 | 0.01841 |
Found 6 HERVIP10F-int transposable elements were hypo-methylated:
Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
---|---|---|---|---|---|---|---|
chr5 | 43315802 | 43320924 | - | 0.002548 | chr5:43315812-43317579 | Epigenome browser | Genome browser |
chr12 | 125422060 | 125423034 | + | 0.01333 | chr12:125421477-125423186 | Epigenome browser | Genome browser |
chr7 | 39798802 | 39801111 | + | 0.01619 | chr7:39798460-39801977 | Epigenome browser | Genome browser |
chr22 | 36880537 | 36881062 | - | 0.0001746 | chr22:36879929-36880831 | Epigenome browser | Genome browser |
chr7 | 39796581 | 39797036 | + | 0.0002268 | chr7:39794764-39798351 | Epigenome browser | Genome browser |
chr7 | 39798159 | 39798804 | + | 0.001446 | chr7:39794764-39798351 | Epigenome browser | Genome browser |