Transposable elements methylation details:
| Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
|---|---|---|---|---|---|
| HERVFH19-int | LTR | 111 | 7.12E-11 | 6.414e-10 | Breast |
TE Information :
| Family | Total base | CpG count | CpG content |
|---|---|---|---|
| ERV1 | 125541 | 1123 | 0.01789 |
Found 1 HERVFH19-int transposable elements were hypo-methylated:
| Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
|---|---|---|---|---|---|---|---|
| chr3 | 49578676 | 49578803 | + | 0.03909 | chr3:49577487-49578694 | Epigenome browser | Genome browser |