Transposable elements methylation details:
Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
---|---|---|---|---|---|
HERV3-int | LTR | 288 | 3.42E-09 | 2.657e-12 | Breast |
TE Information :
Family | Total base | CpG count | CpG content |
---|---|---|---|
ERV1 | 419182 | 4439 | 0.02118 |
Found 24 HERV3-int transposable elements were hypo-methylated:
Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
---|---|---|---|---|---|---|---|
chr3 | 112024086 | 112026588 | + | 0.0002564 | chr3:112022927-112024745 | Epigenome browser | Genome browser |
chr19 | 20794449 | 20796640 | + | 0.000000001218 | chr19:20795591-20796338 | Epigenome browser | Genome browser |
chr8 | 54436184 | 54437274 | - | 0.000002496 | chr8:54436883-54438097 | Epigenome browser | Genome browser |
chr4 | 8439766 | 8440993 | + | 0.000000001184 | chr4:8439177-8441791 | Epigenome browser | Genome browser |
chr8 | 54433522 | 54434670 | - | 0.00339 | chr8:54432551-54434181 | Epigenome browser | Genome browser |
chr1 | 35609477 | 35609882 | - | 0.007786 | chr1:35608541-35609735 | Epigenome browser | Genome browser |
chr8 | 54433039 | 54433282 | - | 0.01072 | chr8:54432551-54434181 | Epigenome browser | Genome browser |
chr19 | 22708172 | 22710340 | + | 0.00004681 | chr19:22709927-22711495 | Epigenome browser | Genome browser |
chr4 | 8439254 | 8439650 | + | 0.001879 | chr4:8439177-8441791 | Epigenome browser | Genome browser |
chr19 | 22711110 | 22714351 | + | 0.00002031 | chr19:22714127-22715118 | Epigenome browser | Genome browser |
chr4 | 8437247 | 8438237 | + | 0.0002625 | chr4:8434347-8438571 | Epigenome browser | Genome browser |
chr6 | 52786713 | 52787251 | + | 0.00008399 | chr6:52786063-52786905 | Epigenome browser | Genome browser |
chr4 | 8436109 | 8436936 | + | 0.00008544 | chr4:8434347-8438571 | Epigenome browser | Genome browser |
chr7 | 140355827 | 140357502 | + | 0.0000121 | chr7:140355846-140357298 | Epigenome browser | Genome browser |
chr8 | 47037181 | 47037769 | + | 0.0009297 | chr8:47037127-47038598 | Epigenome browser | Genome browser |
chr4 | 69766763 | 69772824 | - | 0.00000001215 | chr4:69769738-69772094 | Epigenome browser | Genome browser |
chr7 | 64451294 | 64459721 | - | 0.0006662 | chr7:64458648-64460273 | Epigenome browser | Genome browser |
chr4 | 8440972 | 8441476 | + | 0.002008 | chr4:8439177-8441791 | Epigenome browser | Genome browser |
chr6 | 86574484 | 86577046 | - | 0.00004141 | chr6:86573747-86575773 | Epigenome browser | Genome browser |
chr7 | 134860707 | 134861747 | + | 0.0000000287 | chr7:134860826-134863571 | Epigenome browser | Genome browser |
chr11 | 58688718 | 58690603 | - | 0.00001363 | chr11:58689162-58692801 | Epigenome browser | Genome browser |
chr19 | 50456726 | 50458462 | + | 0.0006129 | chr19:50457405-50458275 | Epigenome browser | Genome browser |
chr19 | 22710600 | 22711010 | + | 0.00005611 | chr19:22709927-22711495 | Epigenome browser | Genome browser |
chr7 | 134861746 | 134865303 | + | 0.00044 | chr7:134860826-134863571 | Epigenome browser | Genome browser |