Transposable elements methylation details:

Transposable ElementsClassCopy Numberp-value by RAPp-value by uniquely readsHypomethylated in
HERV3-intLTR2883.42E-092.657e-12Breast

TE Information :

FamilyTotal baseCpG countCpG content
ERV141918244390.02118

Found 24 HERV3-int transposable elements were hypo-methylated:

ChromosomeStartEndStrandANOVA pvalueDetected H3K4me1 peaksEpigenome browser linkGenome browser link
chr3112024086112026588+0.0002564chr3:112022927-112024745Epigenome browserGenome browser
chr192079444920796640+0.000000001218chr19:20795591-20796338Epigenome browserGenome browser
chr85443618454437274-0.000002496chr8:54436883-54438097Epigenome browserGenome browser
chr484397668440993+0.000000001184chr4:8439177-8441791Epigenome browserGenome browser
chr85443352254434670-0.00339chr8:54432551-54434181Epigenome browserGenome browser
chr13560947735609882-0.007786chr1:35608541-35609735Epigenome browserGenome browser
chr85443303954433282-0.01072chr8:54432551-54434181Epigenome browserGenome browser
chr192270817222710340+0.00004681chr19:22709927-22711495Epigenome browserGenome browser
chr484392548439650+0.001879chr4:8439177-8441791Epigenome browserGenome browser
chr192271111022714351+0.00002031chr19:22714127-22715118Epigenome browserGenome browser
chr484372478438237+0.0002625chr4:8434347-8438571Epigenome browserGenome browser
chr65278671352787251+0.00008399chr6:52786063-52786905Epigenome browserGenome browser
chr484361098436936+0.00008544chr4:8434347-8438571Epigenome browserGenome browser
chr7140355827140357502+0.0000121chr7:140355846-140357298Epigenome browserGenome browser
chr84703718147037769+0.0009297chr8:47037127-47038598Epigenome browserGenome browser
chr46976676369772824-0.00000001215chr4:69769738-69772094Epigenome browserGenome browser
chr76445129464459721-0.0006662chr7:64458648-64460273Epigenome browserGenome browser
chr484409728441476+0.002008chr4:8439177-8441791Epigenome browserGenome browser
chr68657448486577046-0.00004141chr6:86573747-86575773Epigenome browserGenome browser
chr7134860707134861747+0.0000000287chr7:134860826-134863571Epigenome browserGenome browser
chr115868871858690603-0.00001363chr11:58689162-58692801Epigenome browserGenome browser
chr195045672650458462+0.0006129chr19:50457405-50458275Epigenome browserGenome browser
chr192271060022711010+0.00005611chr19:22709927-22711495Epigenome browserGenome browser
chr7134861746134865303+0.00044chr7:134860826-134863571Epigenome browserGenome browser