Transposable elements methylation details:
Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
---|---|---|---|---|---|
HERV15-int | LTR | 88 | 1.13E-10 | 5.062e-13 | Breast |
TE Information :
Family | Total base | CpG count | CpG content |
---|---|---|---|
ERV1 | 157939 | 1597 | 0.02022 |
Found 16 HERV15-int transposable elements were hypo-methylated:
Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
---|---|---|---|---|---|---|---|
chr12 | 10516411 | 10518019 | + | 0.00000001834 | chr12:10517812-10520475 | Epigenome browser | Genome browser |
chr12 | 10518010 | 10518666 | + | 0.01255 | chr12:10517812-10520475 | Epigenome browser | Genome browser |
chr3 | 33009559 | 33010466 | + | 0.01303 | chr3:33008863-33010745 | Epigenome browser | Genome browser |
chrX | 119221041 | 119222173 | - | 0.00005849 | chrX:119221123-119221890 | Epigenome browser | Genome browser |
chr16 | 20685931 | 20687566 | + | 0.00000004428 | chr16:20687413-20690225 | Epigenome browser | Genome browser |
chr16 | 20688217 | 20688803 | + | 0.04065 | chr16:20687413-20690225 | Epigenome browser | Genome browser |
chr16 | 20687559 | 20688242 | + | 0.002247 | chr16:20687413-20690225 | Epigenome browser | Genome browser |
chr2 | 26524332 | 26527312 | + | 0.00000191 | chr2:26523080-26526641 | Epigenome browser | Genome browser |
chr2 | 26522892 | 26524331 | + | 0.02943 | chr2:26523080-26526641 | Epigenome browser | Genome browser |
chr12 | 10519213 | 10520044 | + | 0.01017 | chr12:10517812-10520475 | Epigenome browser | Genome browser |
chr7 | 50107553 | 50108622 | - | 0.0000001673 | chr7:50107213-50108513 | Epigenome browser | Genome browser |
chr12 | 10518640 | 10519219 | + | 0.0004208 | chr12:10517812-10520475 | Epigenome browser | Genome browser |
chr3 | 33009196 | 33009566 | + | 0.0000004292 | chr3:33008863-33010745 | Epigenome browser | Genome browser |
chrX | 49166085 | 49166404 | + | 0.01012 | chrX:49165000-49166254 | Epigenome browser | Genome browser |
chr7 | 50108613 | 50110182 | - | 0.0004661 | chr7:50109068-50109984 | Epigenome browser | Genome browser |
chr19 | 21786135 | 21788299 | + | 0.000006342 | chr19:21785816-21788639 | Epigenome browser | Genome browser |