Transposable elements methylation details:
Transposable Elements | Class | Copy Number | p-value by RAP | p-value by uniquely reads | Hypomethylated in |
---|---|---|---|---|---|
AluSx4 | SINE | 5670 | 1.13E-05 | 0.006824 | Blood |
TE Information :
Family | Total base | CpG count | CpG content |
---|---|---|---|
Alu | 1576382 | 40157 | 0.05095 |
Found 130 AluSx4 transposable elements were hypo-methylated:
Chromosome | Start | End | Strand | ANOVA pvalue | Detected H3K4me1 peaks | Epigenome browser link | Genome browser link |
---|---|---|---|---|---|---|---|
chr18 | 682588 | 682910 | + | 0.005115 | chr18:680960-683845 | Epigenome browser | Genome browser |
chr12 | 120693219 | 120693529 | + | 0.0001319 | chr12:120684350-120702974 | Epigenome browser | Genome browser |
chr3 | 176857810 | 176858101 | + | 0.005998 | chr3:176853222-176870836 | Epigenome browser | Genome browser |
chr16 | 86699316 | 86699587 | - | 0.03786 | chr16:86697513-86699546 | Epigenome browser | Genome browser |
chr3 | 23899339 | 23899531 | - | 0.01245 | chr3:23897252-23902735 | Epigenome browser | Genome browser |
chr12 | 53577993 | 53578269 | - | 0.01703 | chr12:53574826-53580078 | Epigenome browser | Genome browser |
chr6 | 29610023 | 29610174 | + | 0.02839 | chr6:29608030-29611201 | Epigenome browser | Genome browser |
chr17 | 76748522 | 76748810 | - | 0.000002538 | chr17:76702321-76776916 | Epigenome browser | Genome browser |
chr6 | 17015065 | 17015331 | - | 0.002541 | chr6:17014928-17016112 | Epigenome browser | Genome browser |
chr7 | 36759747 | 36760075 | - | 0.0002753 | chr7:36759965-36767885 | Epigenome browser | Genome browser |
chr12 | 44225350 | 44225645 | - | 0.000001298 | chr12:44224566-44229928 | Epigenome browser | Genome browser |
chr1 | 150361093 | 150361379 | - | 0.009093 | chr1:150361189-150362708 | Epigenome browser | Genome browser |
chr5 | 158631532 | 158631835 | + | 0.0005487 | chr5:158621156-158634857 | Epigenome browser | Genome browser |
chr4 | 26364750 | 26365059 | - | 0.001154 | chr4:26361333-26364800 | Epigenome browser | Genome browser |
chr1 | 9725806 | 9725978 | - | 0.000733 | chr1:9724147-9727040 | Epigenome browser | Genome browser |
chr16 | 46858577 | 46858875 | - | 0.003892 | chr16:46858431-46859657 | Epigenome browser | Genome browser |
chr7 | 37479765 | 37480074 | + | 0.01095 | chr7:37477897-37485126 | Epigenome browser | Genome browser |
chr6 | 24922806 | 24923109 | + | 0.0000000003876 | chr6:24911239-24932710 | Epigenome browser | Genome browser |
chr13 | 41236029 | 41236333 | + | 0.00000006494 | chr13:41158794-41238117 | Epigenome browser | Genome browser |
chr21 | 47978730 | 47979037 | + | 0.0357 | chr21:47976999-47982590 | Epigenome browser | Genome browser |
chr12 | 121339114 | 121339419 | + | 0.04235 | chr12:121335202-121341370 | Epigenome browser | Genome browser |
chr5 | 145585302 | 145585603 | + | 0.0001849 | chr5:145583411-145587236 | Epigenome browser | Genome browser |
chr6 | 118967101 | 118967397 | + | 0.02372 | chr6:118964522-118967233 | Epigenome browser | Genome browser |
chr19 | 21211484 | 21211788 | - | 0.00000008023 | chr19:21203777-21214955 | Epigenome browser | Genome browser |
chr5 | 132443419 | 132443714 | - | 0.04593 | chr5:132441854-132443510 | Epigenome browser | Genome browser |
chr21 | 46335833 | 46336135 | - | 0.0009924 | chr21:46328426-46339360 | Epigenome browser | Genome browser |
chr19 | 16676329 | 16676625 | - | 0.000066 | chr19:16675262-16679538 | Epigenome browser | Genome browser |
chr3 | 136600072 | 136600357 | - | 0.0448 | chr3:136598943-136608335 | Epigenome browser | Genome browser |
chr7 | 44514708 | 44514929 | - | 0.02287 | chr7:44513744-44515508 | Epigenome browser | Genome browser |
chr11 | 121339138 | 121339429 | - | 0.003887 | chr11:121323813-121358664 | Epigenome browser | Genome browser |
chr7 | 138587418 | 138587578 | + | 0.006503 | chr7:138586106-138589980 | Epigenome browser | Genome browser |
chr16 | 53488113 | 53488413 | - | 0.0000000000157 | chr16:53482281-53502490 | Epigenome browser | Genome browser |
chr2 | 24720265 | 24720553 | + | 0.005017 | chr2:24714802-24721774 | Epigenome browser | Genome browser |
chr2 | 26289647 | 26289945 | - | 0.008822 | chr2:26286646-26294757 | Epigenome browser | Genome browser |
chr12 | 111172664 | 111172818 | + | 0.003792 | chr12:111163959-111179579 | Epigenome browser | Genome browser |
chr1 | 46065088 | 46065399 | - | 0.004796 | chr1:46065024-46067071 | Epigenome browser | Genome browser |
chr7 | 150015572 | 150015866 | + | 0.0369 | chr7:150015162-150020259 | Epigenome browser | Genome browser |
chr3 | 107784378 | 107784688 | + | 0.01433 | chr3:107775548-107808269 | Epigenome browser | Genome browser |
chr14 | 93672350 | 93672650 | - | 0.000956 | chr14:93670254-93672894 | Epigenome browser | Genome browser |
chr9 | 75210785 | 75211090 | - | 0.001657 | chr9:75210974-75212567 | Epigenome browser | Genome browser |
chr7 | 105175677 | 105175974 | - | 0.001364 | chr7:105172954-105175832 | Epigenome browser | Genome browser |
chr17 | 57904670 | 57904968 | - | 0.0004855 | chr17:57902297-57911252 | Epigenome browser | Genome browser |
chr22 | 20881964 | 20882263 | + | 0.04235 | chr22:20875678-20889006 | Epigenome browser | Genome browser |
chr7 | 104986921 | 104987212 | + | 0.00000004722 | chr7:104982819-104989307 | Epigenome browser | Genome browser |
chr1 | 29249139 | 29249436 | - | 0.001138 | chr1:29241945-29276086 | Epigenome browser | Genome browser |
chr6 | 157339347 | 157339646 | - | 0.005136 | chr6:157337671-157342148 | Epigenome browser | Genome browser |
chr16 | 79123231 | 79123525 | - | 0.004727 | chr16:79122605-79128745 | Epigenome browser | Genome browser |
chr18 | 21603982 | 21604274 | - | 0.000009517 | chr18:21596152-21625407 | Epigenome browser | Genome browser |
chr19 | 4070688 | 4070997 | - | 0.02809 | chr19:4067745-4070704 | Epigenome browser | Genome browser |
chr14 | 77379397 | 77379606 | + | 0.02295 | chr14:77379142-77380717 | Epigenome browser | Genome browser |
chr19 | 34752898 | 34753186 | - | 0.04103 | chr19:34749932-34753483 | Epigenome browser | Genome browser |
chr3 | 196486379 | 196486695 | - | 0.03641 | chr3:196486437-196487473 | Epigenome browser | Genome browser |
chr3 | 169976101 | 169976383 | - | 0.006151 | chr3:169975297-169976743 | Epigenome browser | Genome browser |
chr3 | 52285493 | 52285788 | + | 0.007676 | chr3:52280101-52311504 | Epigenome browser | Genome browser |
chr18 | 60537119 | 60537428 | - | 0.00000000576 | chr18:60535814-60537867 | Epigenome browser | Genome browser |
chr22 | 17569376 | 17569677 | - | 0.00005175 | chr22:17566658-17583827 | Epigenome browser | Genome browser |
chr17 | 29146503 | 29146716 | - | 0.0001408 | chr17:29139104-29150155 | Epigenome browser | Genome browser |
chr12 | 102232238 | 102232531 | + | 0.02933 | chr12:102231493-102234094 | Epigenome browser | Genome browser |
chr2 | 174796070 | 174796369 | - | 0.02413 | chr2:174785838-174797901 | Epigenome browser | Genome browser |
chr5 | 55283679 | 55283987 | + | 0.02068 | chr5:55272017-55284395 | Epigenome browser | Genome browser |
chr7 | 4849289 | 4849466 | - | 0.0001334 | chr7:4848884-4850079 | Epigenome browser | Genome browser |
chr1 | 167419875 | 167420178 | + | 0.000000000004457 | chr1:167404368-167424692 | Epigenome browser | Genome browser |
chr12 | 122942531 | 122942841 | - | 0.00138 | chr12:122941655-122942919 | Epigenome browser | Genome browser |
chr7 | 65586450 | 65586605 | - | 0.04262 | chr7:65586523-65588931 | Epigenome browser | Genome browser |
chr15 | 61156007 | 61156303 | - | 0.04299 | chr15:61154160-61156340 | Epigenome browser | Genome browser |
chr14 | 55767029 | 55767324 | + | 0.01028 | chr14:55766466-55767752 | Epigenome browser | Genome browser |
chr16 | 57301199 | 57301507 | + | 0.003633 | chr16:57298744-57303887 | Epigenome browser | Genome browser |
chr7 | 13097930 | 13098235 | + | 0.0133 | chr7:13096412-13098313 | Epigenome browser | Genome browser |
chr17 | 17940622 | 17940927 | + | 0.0000000002027 | chr17:17940364-17942471 | Epigenome browser | Genome browser |
chr17 | 1197761 | 1197983 | - | 0.00005272 | chr17:1196388-1203335 | Epigenome browser | Genome browser |
chr2 | 106374856 | 106375164 | - | 0.007438 | chr2:106362856-106434293 | Epigenome browser | Genome browser |
chr8 | 130987134 | 130987424 | - | 0.000006688 | chr8:130982556-130989913 | Epigenome browser | Genome browser |
chr3 | 179067298 | 179067594 | - | 0.01484 | chr3:179065854-179069036 | Epigenome browser | Genome browser |
chr13 | 41535011 | 41535117 | - | 0.0008524 | chr13:41533862-41554832 | Epigenome browser | Genome browser |
chr8 | 101526843 | 101527167 | - | 0.04381 | chr8:101525339-101528526 | Epigenome browser | Genome browser |
chr13 | 31316173 | 31316471 | + | 0.00712 | chr13:31308121-31321377 | Epigenome browser | Genome browser |
chr2 | 62434317 | 62434532 | - | 0.001195 | chr2:62424596-62437074 | Epigenome browser | Genome browser |
chr8 | 101942342 | 101942624 | - | 0.004848 | chr8:101935086-101962646 | Epigenome browser | Genome browser |
chr7 | 5649481 | 5649693 | - | 0.01011 | chr7:5649085-5650164 | Epigenome browser | Genome browser |
chr22 | 40446817 | 40447126 | - | 0.0002854 | chr22:40441556-40455899 | Epigenome browser | Genome browser |
chr6 | 35413036 | 35413305 | - | 0.03779 | chr6:35413219-35414122 | Epigenome browser | Genome browser |
chr5 | 156612254 | 156612550 | - | 0.00003979 | chr5:156611020-156664038 | Epigenome browser | Genome browser |
chr17 | 46993613 | 46993912 | - | 0.0001879 | chr17:46986410-46993849 | Epigenome browser | Genome browser |
chr17 | 76385274 | 76385565 | - | 0.01013 | chr17:76374796-76387407 | Epigenome browser | Genome browser |
chr22 | 40796366 | 40796672 | + | 0.0000000004099 | chr22:40790382-40800539 | Epigenome browser | Genome browser |
chr12 | 121661579 | 121661666 | + | 0.00006928 | chr12:121659982-121666118 | Epigenome browser | Genome browser |
chr2 | 102309692 | 102309968 | - | 0.01375 | chr2:102307861-102309909 | Epigenome browser | Genome browser |
chr1 | 29275181 | 29275471 | + | 0.001107 | chr1:29241945-29276086 | Epigenome browser | Genome browser |
chr1 | 150543241 | 150543553 | - | 0.04321 | chr1:150534395-150549382 | Epigenome browser | Genome browser |
chr7 | 40011214 | 40011503 | + | 0.03849 | chr7:40005931-40021447 | Epigenome browser | Genome browser |
chr2 | 127417344 | 127417554 | - | 0.0003713 | chr2:127414534-127425421 | Epigenome browser | Genome browser |
chr20 | 35224886 | 35225066 | + | 0.03645 | chr20:35219316-35225143 | Epigenome browser | Genome browser |
chr14 | 102485953 | 102486104 | - | 0.0001769 | chr14:102485582-102487794 | Epigenome browser | Genome browser |
chr19 | 1070012 | 1070293 | - | 0.00000001423 | chr19:1068507-1071367 | Epigenome browser | Genome browser |
chr12 | 69027369 | 69027664 | + | 0.000005455 | chr12:69006531-69043965 | Epigenome browser | Genome browser |
chr13 | 43562587 | 43562884 | + | 0.000000751 | chr13:43561149-43566187 | Epigenome browser | Genome browser |
chr8 | 66669837 | 66670151 | - | 0.02058 | chr8:66669927-66672318 | Epigenome browser | Genome browser |
chr2 | 219221124 | 219221421 | + | 0.03439 | chr2:219221048-219222048 | Epigenome browser | Genome browser |
chr17 | 75402740 | 75403051 | - | 0.0000001137 | chr17:75370671-75410363 | Epigenome browser | Genome browser |
chr9 | 111868059 | 111868351 | - | 0.03668 | chr9:111868252-111881464 | Epigenome browser | Genome browser |
chr20 | 43607425 | 43607743 | - | 0.0000000000001639 | chr20:43596932-43627314 | Epigenome browser | Genome browser |
chr5 | 95148659 | 95148947 | - | 0.0009586 | chr5:95142019-95157743 | Epigenome browser | Genome browser |
chr15 | 68869781 | 68870085 | + | 0.01321 | chr15:68869626-68871272 | Epigenome browser | Genome browser |
chr15 | 65144824 | 65145036 | - | 0.04972 | chr15:65142845-65144899 | Epigenome browser | Genome browser |
chr17 | 79630727 | 79630900 | - | 0.01277 | chr17:79628714-79633412 | Epigenome browser | Genome browser |
chr17 | 75396051 | 75396275 | - | 0.00000000006825 | chr17:75370671-75410363 | Epigenome browser | Genome browser |
chr9 | 112729692 | 112729988 | - | 0.02468 | chr9:112728198-112733329 | Epigenome browser | Genome browser |
chr17 | 73326500 | 73326784 | + | 0.0225 | chr17:73326513-73330362 | Epigenome browser | Genome browser |
chr19 | 15419118 | 15419410 | + | 0.005016 | chr19:15384559-15419338 | Epigenome browser | Genome browser |
chr6 | 5176302 | 5176596 | - | 0.01087 | chr6:5173417-5177991 | Epigenome browser | Genome browser |
chr12 | 116628615 | 116628926 | + | 0.003531 | chr12:116628506-116629749 | Epigenome browser | Genome browser |
chr19 | 15398585 | 15398878 | - | 0.0003531 | chr19:15384559-15419338 | Epigenome browser | Genome browser |
chr3 | 52304117 | 52304432 | - | 0.000000171 | chr3:52280101-52311504 | Epigenome browser | Genome browser |
chr1 | 27047695 | 27047991 | - | 0.00005871 | chr1:27036622-27057112 | Epigenome browser | Genome browser |
chr7 | 5813213 | 5813495 | - | 0.0005351 | chr7:5811573-5820800 | Epigenome browser | Genome browser |
chr16 | 74634348 | 74634659 | + | 0.0008177 | chr16:74632402-74640332 | Epigenome browser | Genome browser |
chr22 | 29206338 | 29206629 | + | 0.0000000000981 | chr22:29203619-29211930 | Epigenome browser | Genome browser |
chr8 | 42568003 | 42568283 | - | 0.000002214 | chr8:42563135-42569178 | Epigenome browser | Genome browser |
chr17 | 8803075 | 8803367 | + | 0.002752 | chr17:8795952-8805751 | Epigenome browser | Genome browser |
chr9 | 123634036 | 123634345 | + | 0.003315 | chr9:123634290-123638851 | Epigenome browser | Genome browser |
chr20 | 35602855 | 35603155 | + | 0.00000006267 | chr20:35595030-35604578 | Epigenome browser | Genome browser |
chr12 | 31901478 | 31901772 | - | 0.009937 | chr12:31900757-31906045 | Epigenome browser | Genome browser |
chr14 | 58749051 | 58749344 | - | 0.0000008301 | chr14:58746711-58753196 | Epigenome browser | Genome browser |
chr1 | 40512446 | 40512742 | - | 0.001317 | chr1:40506736-40533238 | Epigenome browser | Genome browser |
chr5 | 79529619 | 79529928 | - | 0.0004957 | chr5:79471751-79538210 | Epigenome browser | Genome browser |
chr19 | 18430092 | 18430368 | + | 0.03953 | chr19:18426965-18433797 | Epigenome browser | Genome browser |
chr14 | 64191375 | 64191617 | + | 0.03917 | chr14:64189903-64194067 | Epigenome browser | Genome browser |
chr3 | 31605307 | 31605431 | - | 0.0007106 | chr3:31599509-31613480 | Epigenome browser | Genome browser |
chr12 | 96919480 | 96919761 | - | 0.03368 | chr12:96919657-96920991 | Epigenome browser | Genome browser |
chr3 | 133194963 | 133195263 | + | 0.01071 | chr3:133192489-133195168 | Epigenome browser | Genome browser |